schemist

Contents:

  • Installation
  • Usage
  • schemist
    • schemist package
schemist
  • schemist
  • View page source

schemist

  • schemist package
    • Submodules
    • schemist.cleaning module
      • clean_selfies()
      • clean_smiles()
      • sanitize_smiles_to_mol()
    • schemist.cli module
      • main()
    • schemist.collating module
      • collate_inventory()
      • collate_inventory_from_file()
      • deduplicate()
      • deduplicate_file()
    • schemist.converting module
      • convert_string_representation()
      • mini_helm2helm()
    • schemist.features module
      • calculate_2d_features()
      • calculate_3d_features()
      • calculate_feature()
      • calculate_fingerprints()
      • smiles_to_3d()
    • schemist.generating module
      • all_peptides_in_length_range()
      • all_peptides_of_one_length()
      • random()
      • react()
      • sample_peptides_in_length_range()
    • schemist.io module
      • read_sdf()
      • read_weird_xml()
    • schemist.rest_lookup module
    • schemist.splitting module
      • random()
      • split()
      • split_random()
      • split_scaffold()
    • schemist.tables module
      • assign_groups()
      • cleaner()
      • converter()
      • featurizer()
      • reactor()
      • splitter()
    • schemist.typing module
      • DataSplits
        • DataSplits.test
        • DataSplits.train
        • DataSplits.validation
    • schemist.utils module
    • Module contents
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